rs241142113 SNP Detail

Summary

• ID
  rs241142113
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:106479156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCAGGGAG CAGGACCGGC
  TGGACACTGA TCCAGATGAG TGAAGCCCAG GCATACCCAG GGCAGGCATT CATTGGTTTT
  ACCTAGGTAT CTCCTGGTCC CTCACAGGGA ACTGCGTCCT GTCACAGAGG AGGAAAGCGG
  AAGTATAAGG GGTAGTGCTT TTTATTAGGG ATGGAGAAAC AGAAGTAGAA CCTAGCACCT
  R
  GGCACCTTAG TTTTTGCTGT TTGGGCCCCT GCTGAGCAGA GGAGAGCCAA GATATTCAGT
  TGAGAGGCCA GATGCACAGA CTGGAGGGGC GGTGGCCTGC TGTGTTCAGC GGAAGCGCTC
  TAGAATACAC ACACAGCTCT GGAGTGGGCA AGGCTTGCTC AGCTGGAAGG GCCTGTCCTG
  ACAGCTCTGT GTGGAGGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321246852	CHEV_4_106294564	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241142113					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106479156 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14527	CpG island 14527	424 bp proximal
Rr596780	regulatory region 596780	within coordinates
Tssr38185	transcription start site region 38185	465 bp upstream
Tssr38186	transcription start site region 38186	527 bp upstream
Tssr38187	transcription start site region 38187	569 bp upstream
Ttc22	tetratricopeptide repeat domain 22	490 bp upstream