rs241142677 SNP Detail

Summary

• ID
  rs241142677
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:3285094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCAATACAT CTCAAGTGGC ATGCTCACTA
  CATCTCATGT GGGATGGTCA CTGCATCACA GTTGGGATCG TCACTGCATC TCAGGTGAGA
  TGGTTACTGC ATCTCAGGTA AGAGTCATTA CATCTCCCTT GGGATGGTCA CTGCATCACA
  S
  GTGAGATGGT TACTGCATCC GCTCCGGTTG GTGTCAAAGG ATATGGATTT GCCTGCGGTG
  AAGCGGCCAC GGTGAGGGGA GGCCGGGCAT GCGGGCGCTT CGACCCGGTG ACAGGGCAGC
  GTATTAATAC GGTACGTTCC TGGGAGGTTA                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323871532	CHEV_12_3235094	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241142677					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:3285094 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4353	CpG island 4353	within coordinates
Gm60416	predicted gene, 60416	within coordinates
Rab10os	RAB10, member RAS oncogene family, opposite strand	697 bp upstream
Rr265316	regulatory region 265316	within coordinates
Tssr112476	transcription start site region 112476	395 bp upstream
Tssr112477	transcription start site region 112477	640 bp upstream
Tssr112478	transcription start site region 112478	708 bp upstream
Tssr115578	transcription start site region 115578	196 bp downstream