rs241144135 SNP Detail

Summary

• ID
  rs241144135
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:114268698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGTGGCAG CGCGCCTACC
  GTGAGCACGG CTGCAGGAGT CCCGGAGGTC CGTGCTCGGC GCAGGCATGA TCGGCCAGAA
  GACCCTATAC TCTTTCTTCT CTCCGACCCC CACAGGGAAG CGGACCACGC GCAGCCCGGA
  GCCGGTCCCA GGGAGCGGAG TGGCGGCCGA GATCGGCGGC GATGCCGTGG TGAGACGAGC
  R
  GGGTAGCGCG GGACGCGGGG GTACGGCGGG GTCCCGGGCA GGAGCGCCAC GCACGCCGCT
  TGCTCGGACA GACTGGGACA CCTTAGGGGT TCAACACAGC CGCGCGCTGT CGGCCGCCGC
  CACGCCGAGG CACTAGCCAA TAGGGATGGG GCACGGTCGC CGCAGAGCCA ATCAGTGTGC
  AGCGTGCCCG CCCTGCTCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366325801	MGP_WTSI_5_114580646	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241144135					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366325801	MGP_WTSI_5_114580646	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:114268698 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16310	CpG island 16310	within coordinates
Gm73237	predicted gene, 73237	within coordinates
Rr378486	regulatory region 378486	1890 bp downstream
Tssr48056	transcription start site region 48056	261 bp downstream
Tssr48057	transcription start site region 48057	193 bp downstream
Tssr48058	transcription start site region 48058	520 bp upstream
Tssr48059	transcription start site region 48059	547 bp upstream
Tssr48060	transcription start site region 48060	1573 bp upstream
Tssr52695	transcription start site region 52695	68 bp downstream
Tssr52696	transcription start site region 52696	949 bp downstream
Ung	uracil DNA glycosylase	within coordinates