rs241146388 SNP Detail

Summary

• ID
  rs241146388
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:117842939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGGCGACG TCTCTTCCAG
  GGCAGCGCGC GGCCCGCGAC GCTGGGGCCC AGGAGGACGA GGACAGCGAG GAGGCGGTGG
  CGGCGGCTCC TCACGCTCAC ACGGCCACGG CTTCCCCGCC TCCCGGCTCC GCCCGCCGCG
  CCGCCGCTGC CGCACGGCAT GCTGGGAGCG AGGGGCGGTG CCGGCGCCCT AGGAGCCTGG
  R
  GAGGGGCGGG GCTCGGGGTG AAAGGCGGGG CTATTGGTCA CAGAATATGG ACTAGAGGCG
  GGGCTTATGA CAGGGGTAGG GTCACCTAGG AGGGGCGGTG CCGGCGCGCC CCAAGCCTGG
  AGAAGAAGGG CGGGACTAGT TGGGGCGTGG TCTGTGGCTG CTGAACCTGG AGAGGGGAGG
  GGCGAAAGTC AAAAGGCGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372884724	MGP_WTSI_7_125387230	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241146388					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372884724	MGP_WTSI_7_125387230	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:117842939 () rs orientation: forward

Symbol	Name	Function Class
4930583K01Rik	RIKEN cDNA 4930583K01 gene	191 bp upstream
Cpgi19616	CpG island 19616	within coordinates
Rr400585	regulatory region 400585	41 bp upstream
Rr654423	regulatory region 654423	90 bp distal
Rr654424	regulatory region 654424	120 bp distal
Rr654425	regulatory region 654425	within coordinates
Rr654426	regulatory region 654426	104 bp proximal
Rr654427	regulatory region 654427	489 bp proximal
Smg1	SMG1 nonsense mediated mRNA decay associated PI3K related kinase	46 bp upstream
Tssr68712	transcription start site region 68712	144 bp upstream
Tssr74428	transcription start site region 74428	304 bp upstream
Tssr74429	transcription start site region 74429	180 bp upstream
Tssr74430	transcription start site region 74430	75 bp upstream
Tssr74431	transcription start site region 74431	30 bp upstream