rs241150944 SNP Detail

Summary

• ID
  rs241150944
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:190713292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACACCATG GGGAAGAGCC
  CTGCCTAGGA CTAGTTTCTG GCTGCTCAGC TCTATGTGGG AGTTGGGATG GAAACCTCTA
  TGAGGCAGGC AGGGTGGGAG CCAGGATCAG TAGAGGATCA ATGGAGGCAA CCTGGGTTCT
  AAACCTACCA GGACAGAGCC CTGGGCATGA GACTATGGAT GGAGTCATCA CTGAGCACAG
  W
  AACGCCAGTC TATGTCAGAA CATTCTTAAC GGTCCTCGGG CAACAAGCAC ACCTGGGAAA
  GAATCAGGAG GGAGAAGACA ATGTGTGCCC AGGGAATCTC GTTCCTAATT AAAAGGAAAC
  CCACCTGTTT GCTCATCCCA AACGCCCTTC TCTCCTGTCT GCAGTTCATC CTTAAGTCCA
  TCTCTCTCCC TTCCACGTCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320194440	CHEV_1_192804974	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241150944					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190713292 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1214	CpG island 1214	1487 bp distal
Tssr15742	transcription start site region 15742	1941 bp upstream
Tssr15743	transcription start site region 15743	1917 bp upstream
Tssr15744	transcription start site region 15744	1905 bp upstream
Tssr15745	transcription start site region 15745	1863 bp upstream
Tssr15746	transcription start site region 15746	1823 bp upstream
Tssr15747	transcription start site region 15747	1793 bp upstream
Vash2	vasohibin 2	1799 bp upstream