rs241185338 SNP Detail

Summary

• ID
  rs241185338
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:67145087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGGAGCA GCAGCGCCTG
  ATCAATGAAC TGTCAACCCA GAAGGCACGC TTGCACACAG AGTCAGGTCA GTCTGTGCCA
  CACTAGCCTG GGAACAGCAA AGCATGAGAG GTCTGCCCGA TCCTGGACGC TGGGGTCTTG
  CCCTGCACAA TGTGTACAAG AGATGGTTAC AAATGAATGA CTCTAAGCTA TGATTAGAGG
  M
  GAGTTGGGAA ATGAACCTCT TGGGCTTGGG AAAGTTTTGT TACCTCCATA ACCCTCAAGA
  ATCCCCCATT CTACAATACC AAAGAAAGCA GTTCACGAAC ATTCTGGAGA CACTCTTTGC
  ACTCTATGAA TAAGGAGGGT CGTATTCTGG TCCACCTGAG AGAAGAGAGT TCAATCATTT
  GTGTTTCCTC TCTCAGGCGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383730865	MGP_WTSI_11_67067763	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241185338					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383730865	MGP_WTSI_11_67067763	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:67145087 () rs orientation: forward

Symbol	Name	Function Class
Myh4	myosin, heavy polypeptide 4, skeletal muscle	within coordinates
Rr449442	regulatory region 449442	275 bp distal
Tssr3528	transcription start site region 3528	472 bp upstream
Tssr3529	transcription start site region 3529	528 bp upstream
Tssr102201	transcription start site region 102201	743 bp downstream
Tssr102202	transcription start site region 102202	254 bp downstream
Tssr102203	transcription start site region 102203	191 bp downstream
Tssr102204	transcription start site region 102204	194 bp upstream
Tssr102205	transcription start site region 102205	412 bp upstream
Tssr102206	transcription start site region 102206	516 bp upstream
Tssr102207	transcription start site region 102207	1160 bp upstream
Tssr102208	transcription start site region 102208	1330 bp upstream
Tssr102209	transcription start site region 102209	1365 bp upstream
Tssr102210	transcription start site region 102210	1383 bp upstream
Tssr102211	transcription start site region 102211	1393 bp upstream
Tssr102212	transcription start site region 102212	1415 bp upstream
Tssr102213	transcription start site region 102213	1567 bp upstream
Tssr102214	transcription start site region 102214	1923 bp upstream
Tssr102215	transcription start site region 102215	1937 bp upstream
Tssr102216	transcription start site region 102216	1981 bp upstream
Tssr108534	transcription start site region 108534	1657 bp upstream
Tssr108535	transcription start site region 108535	1551 bp upstream
Tssr108536	transcription start site region 108536	207 bp upstream
Tssr108537	transcription start site region 108537	186 bp upstream
Tssr108538	transcription start site region 108538	297 bp downstream
Tssr108539	transcription start site region 108539	505 bp downstream
Tssr108540	transcription start site region 108540	565 bp downstream
Tssr108541	transcription start site region 108541	1174 bp downstream
Tssr108542	transcription start site region 108542	1335 bp downstream
Tssr108543	transcription start site region 108543	1450 bp downstream