rs241185830 SNP Detail

Summary

• ID
  rs241185830
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:49673787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATTCAGGG GAAACCACAC
  GTCTGATGAA AACTCAAGGA AAGGGCCCAG GTGAGAGCTC CAGAGAACAC CAGAATAAGT
  AACTCCAGGC CCATGGTACC TCTTCTGTTT CCTTATCTGA ACTGGGCACA ACACCCTACC
  CACAGCTTGT GTGGAGACTC TTAATTAACA TAGTTAATGT GTGCTACCTG TGTTCAAAAT
  R
  TCTAATGTGC ACCTATCCCC TCCTCTCTCA TGCCAAGCTC AAAGTCTGGA TAAAAATGTT
  TGGATCAATT GGAAGAGAAC TTCTAAGGAC TTTAGGTTCT GGACTTGGAG TTTAAGGTTC
  TCTCAGAGAG AAGTTATCAA CTCTGCAGAA ATTGCTATAG AACTTTTCTG GGATAGACTC
  AACCTCACGC CCCATCTCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss396238696	MGP_WTSI_16_49853537	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	G	G	A	A	A	A	A	A	A	G	G	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241185830					SNP	A	A	A	A	A	A	A	A	A	A	G	G	A	A	A	A	A	A	A	G	G	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss396238696	MGP_WTSI_16_49853537	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:49673787 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cd47	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi8307	CpG island 8307			1690 bp proximal
Gm4633	predicted gene 4633			Intron
				Noncoding-Transcript-Variant
Gm56621	predicted gene, 56621			1074 bp upstream
Rr516740	regulatory region 516740			within coordinates
Rr516741	regulatory region 516741			584 bp proximal
Rr516742	regulatory region 516742			1452 bp proximal
Rr516743	regulatory region 516743			1953 bp proximal
Tssr4899	transcription start site region 4899			1682 bp upstream
Tssr4900	transcription start site region 4900			1836 bp upstream
Tssr4901	transcription start site region 4901			1946 bp upstream
Tssr138723	transcription start site region 138723			247 bp downstream
Tssr138724	transcription start site region 138724			923 bp upstream
Tssr138725	transcription start site region 138725			1113 bp upstream
Tssr138726	transcription start site region 138726			1665 bp upstream
Tssr138727	transcription start site region 138727			1695 bp upstream
Tssr138728	transcription start site region 138728			1925 bp upstream
Tssr141348	transcription start site region 141348			1873 bp downstream