rs241202404 SNP Detail

Summary

• ID
  rs241202404
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:23293165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCATACAT GCTTCGTGTA
  CGCAACTCAT TCAGAATGAA AGCTGAACCC AGAGAGCCCT GCCAGGAGCA GTCCAAAGAA
  GTGCCTCTTA GCTTCTCCTC TTTGTTCTTT TAGAAAACTT GACACTTGTC ATCTTTGGGA
  CACAAGTCAA AGCAATGAGG CTAACAATGG CTAGCATAAA TTTAACAGTA CTAAAAAAAA
  M
  CTCACAAAGT GGTGGTGGCC CACATCTTTA ATCCCAGCAC TTCAGAGGTA GAGGCAAGAA
  GATCTCTGTG AAATTGAGGC CATCCTGGTC TACAGAGTGA GTTCCAGGAT AGCCAGGGCT
  ACACAGAGAA ACCCTGTCTA GAAAAAAAAA AGGTCTGTGT GTGTGTTTGT GTGTCTGTCT
  GTCTATCTAT CATGAATAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	C57BL/6J	C57BL/6NJ	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/2J	I/LnJ	MOLF/EiJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RF/J	SPRET/EiJ	WSB/EiJ
ss373939443	MGP_WTSI_8_23913621	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	C57BL/6J	C57BL/6NJ	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/2J	I/LnJ	MOLF/EiJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RF/J	SPRET/EiJ	WSB/EiJ
rs241202404					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373939443	MGP_WTSI_8_23913621	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:23293165 () rs orientation: forward

Symbol	Name	Function Class
Ap3m2	adaptor-related protein complex 3, mu 2 subunit	within coordinates
D8Dcr5	DNA Segment, Chr 8, Derry C. Roopenian 5	1035 bp distal
Rr381798	regulatory region 381798	within coordinates
Rr660722	regulatory region 660722	1060 bp distal
Rr660723	regulatory region 660723	1230 bp distal
Rr660724	regulatory region 660724	1866 bp proximal
Tssr80611	transcription start site region 80611	734 bp downstream