rs241219108 SNP Detail

Summary

• ID
  rs241219108
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128582447 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCAGCCTC TTCTTCCTCT
  GGGTGGGGTT ATACATCCGG GGCCCAGGGC TGGGTCCAGG GCCAGTCTAC TGAACAGACA
  ATTGAGTTTC ACTTCCTGCC AACCTGCAGA GATGGGGGCA GGATGTCTGA GGGGTACAGT
  GATGGGGAGT GTCCAGAGAT TAAAGAGTAA ACAGGTCACA CTAGTATTTC CCCTCACTGA
  K
  CAGGTCCGTG GAGAGCTTTA GAGACCACTC TTGAAAGAGT TCAAGTCATG CACCTCACTA
  ATTTTCAGAG GCACTGTTCC ATATTCTCAT CTCCTTCTCC TCTTTGAGGA AAGGGTACTA
  GATAGACAGG ACTTAAGTGC AATTGATGAA CAAACAGATA CGGGCTGGTA GGCTTGGGCC
  AGAATGGTTG CCTGACTTAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323535818	CHEV_10_128183634	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241219108					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128582447 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2419	CpG island 2419	1124 bp proximal
Dgka	diacylglycerol kinase, alpha	1723 bp upstream
Gm31504	predicted gene, 31504	696 bp downstream
Gm66065	predicted gene, 66065	229 bp upstream
Pym1	PYM homolog 1, exon junction complex associated factor	1311 bp upstream
Rr224483	regulatory region 224483	246 bp distal
Rr224484	regulatory region 224484	753 bp proximal
Rr385481	regulatory region 385481	747 bp upstream
Rr402364	regulatory region 402364	1629 bp downstream
Tssr96440	transcription start site region 96440	1756 bp downstream
Tssr96441	transcription start site region 96441	1555 bp downstream
Tssr96442	transcription start site region 96442	1344 bp downstream
Tssr96443	transcription start site region 96443	104 bp downstream
Tssr96444	transcription start site region 96444	1210 bp upstream
Tssr96445	transcription start site region 96445	1272 bp upstream
Tssr96446	transcription start site region 96446	1923 bp upstream
Tssr99949	transcription start site region 99949	1691 bp upstream
Tssr99950	transcription start site region 99950	1520 bp upstream
Tssr99951	transcription start site region 99951	1497 bp upstream
Tssr99952	transcription start site region 99952	1493 bp upstream
Tssr99953	transcription start site region 99953	1456 bp upstream
Tssr99954	transcription start site region 99954	1112 bp upstream
Tssr99955	transcription start site region 99955	1079 bp upstream
Tssr99956	transcription start site region 99956	326 bp upstream
Tssr99957	transcription start site region 99957	266 bp upstream
Tssr99958	transcription start site region 99958	1050 bp downstream
Tssr99959	transcription start site region 99959	1142 bp downstream