rs241223472 SNP Detail

Summary

• ID
  rs241223472
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170470188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTTTTTAA AAAAGATTTA
  TTTATTTATT GTATGTGAGT ACATTGTTGC TGTCTTCAGA CACAACAGCA GAGGGCATTG
  GATCTCATAC AGATGGTCGT GAGCCACCAT GTGGTTGCTG AGAATTGAGC TCAGGACCTC
  TGGAAGAGCA GTCAGTGCTC TTAATTGCTG AGGCATCTCT CCAGCCCCTC AACATTTTTG
  W
  AAACTACATA TATAGTATTA CTACATATAT AGTATTACTA CATATATAGT ATTACTACAT
  ATATAGTATT ACTACATATA TAGTATTACT ACATATATAG TATTACTACA TATATAGTAT
  TACTACATAT ATAGTATTAC TACATATATA GTATTACTAC ATATATAGTA TTACTACATA
  TATAGTATTA CTACATATAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320111967	CHEV_1_172572750	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241223472					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170470188 () rs orientation: forward

Symbol	Name	Function Class
Cpgi995	CpG island 995	1551 bp proximal
Olfml2b	olfactomedin-like 2B	1913 bp upstream
Rr14047	regulatory region 14047	within coordinates
Rr25614	regulatory region 25614	1984 bp distal
Rr28935	regulatory region 28935	1212 bp proximal
Tssr280	transcription start site region 280	1725 bp downstream
Tssr9927	transcription start site region 9927	221 bp upstream
Tssr9928	transcription start site region 9928	1830 bp upstream
Tssr9929	transcription start site region 9929	1871 bp upstream
Tssr9930	transcription start site region 9930	1904 bp upstream
Tssr9931	transcription start site region 9931	1953 bp upstream
Tssr9932	transcription start site region 9932	1970 bp upstream
Tssr14922	transcription start site region 14922	1709 bp downstream
Tssr14923	transcription start site region 14923	1760 bp downstream