rs241224671 SNP Detail

Summary

• ID
  rs241224671
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:77542724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGAGCCTTC ACAAGACCAA
  GGGCCTCTCC TCTCATTGAT GTCCCACAAG GCCATCCTCT GCTACATATG CAGCTGGAGC
  CATGGTTTCC TCCAATGTAT ACTCTTTGGT TAGTGGTTTA GTCCCTGGGA ACTCTGGGGG
  TACTGGTTAG TTGATATTGT TGTTCCTTCT ATGGGGCTGC AAACCCCTTC AGCTCCTTGG
  R
  TCCTTTCTCT AGCTCCTCCA TTGTTAACCC TGGGCTACAT ACATTTTAAT TATATTTTCT
  TGCTACACAA TGGTCCCAAA AGTCTGGCTT CTGGGAGCCT CTCCACATCT TTAAATTCTC
  TCTTCGAGAT TTTTCTCTCT TGTCCTCAGT ATCCAGGACT CTTCACAGTT GTAGCATTTA
  AGAATGAAGA AAGGGGGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378138841	MGP_WTSI_9_77483249	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241224671					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378138841	MGP_WTSI_9_77483249	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:77542724 () rs orientation: forward

Symbol	Name	Function Class
Gm68532	predicted gene, 68532	within coordinates
Klhl31	kelch-like 31	1290 bp upstream
Rr683389	regulatory region 683389	568 bp proximal
Rr683390	regulatory region 683390	1069 bp proximal
Rr683391	regulatory region 683391	1375 bp proximal
Rr683392	regulatory region 683392	1972 bp proximal
Tssr86194	transcription start site region 86194	1027 bp upstream
Tssr86195	transcription start site region 86195	1052 bp upstream
Tssr86196	transcription start site region 86196	1094 bp upstream
Tssr86197	transcription start site region 86197	1133 bp upstream
Tssr86198	transcription start site region 86198	1177 bp upstream
Tssr86199	transcription start site region 86199	1179 bp upstream
Tssr86200	transcription start site region 86200	1194 bp upstream
Tssr86201	transcription start site region 86201	1271 bp upstream