rs241227107 SNP Detail

Summary

• ID
  rs241227107
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:33569729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTCATCAC CCACAGGGGT
  CTGGGTGACT GCATGCCTGC ACACCAATGG CTTCAACGCC TATCTCAGAA TTGGATCCTC
  TTACAAATGT GAGTCTTTTG TCTGTGTGGA GGTGCCAACC TTTCCCAGAG TGGGTCTTGC
  TGGTAAGGGA GTGTGAGAAC ATGCATCTTG AGGTATGTGA GAATGTGCGT CTTGCGGTGT
  R
  TGAGAACGTG CGTCTCGAGG TGTGTGGGAA TGTGCGTCTC GAGGTGAGTG GGAACGTGCG
  TCTCGAGGTG AGTGGGAATG CCCTAAGGAG AAGTGGAGGA TTTGCATTTA CCTCTCCTTT
  GTGACCAGGG CAATGCTGTT AACACCATCT TAATGAGCCC CTACCTCTCC CTTAATCTCT
  TAAAGCCCTC AAGAGAGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RIIIS/J	SPRET/EiJ
ss400215026	MGP_WTSI_18_33596330	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RIIIS/J	SPRET/EiJ
rs241227107					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400215026	MGP_WTSI_18_33596330	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:33569729 () rs orientation: forward

Symbol	Name	Function Class
Nrep	neuronal regeneration related protein	343 bp downstream
Rr535500	regulatory region 535500	375 bp distal
Tssr152756	transcription start site region 152756	1628 bp downstream
Tssr152757	transcription start site region 152757	1658 bp downstream
Tssr152758	transcription start site region 152758	1945 bp downstream