rs241232348 SNP Detail

Summary

• ID
  rs241232348
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:27748626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACGATCATT CTCAGGGCCA
  TGTGGTTCGC AAAGCCCAGG AGGGAAGCTT ATCTTCCCTG GAAAGCTACT CAATGGAGCT
  ACCAAGGCAG GGAAACGGTG CTTACCCTCA GGCTCAGGTC CCTCCTAGCT GTGGCTGTAG
  GCTTGTGGGC AATCATCTTT AACTCCTCAA CTTATCCAAG TGCCTTAGGG GTAATAGAAC
  R
  CTGTCTTAGT CAGTGTTCTA TTGCTGTGAC GAGATACCAT GACCACTGCA ACTCTTATAA
  AAGAGCACAT TCAATTGAGG TTTCTTGCTG TTTCAGAGGT TTAGTCCATT GTCATCATGG
  CAGGGAGCAT GGTGGCACAC AGGCAGACAT GGTGCTGGAG ATGTAGATGA GAGTTTCTTA
  TTTGGGTCTG TAGGCAGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss374046221	MGP_WTSI_8_28369070	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	A	A	G	G	G	A	A	A	G	A	A	G	A	A	A	A	A	A	G	G	A	A	A	G	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241232348					SNP	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	A	A	G	G	G	A	A	A	G	A	A	G	A	A	A	A	A	A	G	G	A	A	A	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss374046221	MGP_WTSI_8_28369070	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:27748626 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20220	CpG island 20220	1340 bp proximal
Eif4ebp1	eukaryotic translation initiation factor 4E binding protein 1	1729 bp upstream
Rr176179	regulatory region 176179	1626 bp distal
Rr186444	regulatory region 186444	774 bp proximal
Tssr76776	transcription start site region 76776	1723 bp upstream
Tssr76777	transcription start site region 76777	1734 bp upstream
Tssr76778	transcription start site region 76778	1797 bp upstream
Tssr76779	transcription start site region 76779	1831 bp upstream
Tssr76780	transcription start site region 76780	1899 bp upstream