rs241242422 SNP Detail

Summary

• ID
  rs241242422
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153062501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACTTCTAAG cacacacaca cacacacaca
  cacacacaca cacacacaca cacacCAGGG TGACCCAAAG GTTGCTCTCC TGGGTCTATC
  TACCCCCTTA ACCTTGAACT AGCAAACTCA TTAAGCAAAC TCATTAAACT GTTACGAACT
  R
  GTTCACAGTT GATATTCAAC AAGCCTTCTG CTCATAAGAG AAAAGGTTTC TTAGTCTTTT
  AACATCTCAG AGCATATTTT TCACGACATT CTCTCTGGCC CCGCTAGAAA ATAACGTTAA
  GAGGGATAGT GCCAGCCAAG CCCGGTGTTA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320071240	CHEV_1_155033885	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241242422					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153062501 () rs orientation: forward

Symbol	Name	Function Class
Cpgi864	CpG island 864	288 bp distal
Lamc2	laminin, gamma 2	308 bp upstream
Rr13130	regulatory region 13130	500 bp proximal
Rr25076	regulatory region 25076	1491 bp proximal
Rr28719	regulatory region 28719	100 bp distal
Tssr14250	transcription start site region 14250	699 bp upstream
Tssr14251	transcription start site region 14251	663 bp upstream
Tssr14252	transcription start site region 14252	633 bp upstream
Tssr14253	transcription start site region 14253	619 bp upstream
Tssr14254	transcription start site region 14254	600 bp upstream