rs241249439 SNP Detail

Summary

• ID
  rs241249439
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:104306633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGTGCAA AGTGCAGACA
  GGGCTTACAC CCATCCCCCA CTCCTATTCT GATTTTTCTT GTGACCCTAA CATGTCCCTT
  GAAATCTCTG GATCTTGGTT CTCTACTATG AAAATTGGCT TCTGTGACAG CACTTCCTCC
  ATGGAAGTAG GGAGCTCAGG ATGGAGTACT GCACCTGAGA GGCCAGATCA CCTCCTGTGG
  K
  CAGTCACAGA GTCAGGAAGG GCAACAGAGC AGAGCACAAC GCCAGCCAGG GTGGGAAAAC
  TATGAGATAC TCAGAGCTCC AAAAGGTCTT CCCAGACTCA AAGGATGTTT TCTTTCCAGC
  CTGAAGAACA GAGAAGATGG CCTTCATTGT AGCTATGGGG ATGATTTTAA TGGCTGGAAT
  CTGTCCTGCT GTCCTATGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387181491	MGP_WTSI_12_105578584	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241249439					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387181491	MGP_WTSI_12_105578584	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:104306633 () rs orientation: forward

Symbol	Name	Function Class
Serpina3k	serine (or cysteine) peptidase inhibitor, clade A, member 3K	within coordinates
Tssr114842	transcription start site region 114842	1958 bp downstream
Tssr114843	transcription start site region 114843	1273 bp downstream
Tssr114844	transcription start site region 114844	1137 bp downstream
Tssr114845	transcription start site region 114845	1105 bp downstream
Tssr114846	transcription start site region 114846	1016 bp downstream
Tssr114847	transcription start site region 114847	993 bp downstream
Tssr114848	transcription start site region 114848	109 bp upstream
Tssr114849	transcription start site region 114849	136 bp upstream
Tssr114850	transcription start site region 114850	153 bp upstream
Tssr114851	transcription start site region 114851	212 bp upstream
Tssr114852	transcription start site region 114852	269 bp upstream
Tssr114853	transcription start site region 114853	480 bp upstream
Tssr114854	transcription start site region 114854	623 bp upstream
Tssr117574	transcription start site region 117574	495 bp downstream