rs241251552 SNP Detail

Summary

• ID
  rs241251552
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:19875534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGAGAAAT AAGGGGAAAA
  GAATGGTGGA GGTGTCAGCT TCAAAGACAA TGACTCAGGA TTACTGGCAT CTGTTTCTAA
  CCTGGATACT ATGAGCCAAA GGCAGGAAGA TCAAGGGCAA GCCTTGGCTA CACATCAAGG
  CAGTCTCTAC ACAACAACAA AAATAGAAAC TAAAAGCCCA CCCTGTCAAC CAAAACCCCC
  Y
  ACTTAGACTA GGAAATGAAT TCTTGTCTTT TTGTTTGCTA TAGTACAAAG TCCCTCCTCA
  AGACTCAAGG CAATGTACCA AATACTAAGC CAGTATAAAA AAATTTTAAA AATTCATACT
  TCCGATACTT AATGGCATGG AATAAATGTT CCCATTTCAA AATTAAAGAA CAGAAGGATA
  TAAAAGAAAT ATTGAAACTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360789907	MGP_WTSI_4_19802681	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241251552					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360789907	MGP_WTSI_4_19802681	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:19875534 () rs orientation: forward

Symbol	Name	Function Class
Atp6v0d2	ATPase, H+ transporting, lysosomal V0 subunit D2	1304 bp downstream
Gm68467	predicted gene, 68467	437 bp upstream
Tssr41030	transcription start site region 41030	1595 bp downstream
Tssr41031	transcription start site region 41031	1660 bp downstream
Tssr41032	transcription start site region 41032	1677 bp downstream
Tssr41033	transcription start site region 41033	1716 bp downstream
Tssr41034	transcription start site region 41034	1757 bp downstream
Tssr41035	transcription start site region 41035	1792 bp downstream
Tssr41036	transcription start site region 41036	1819 bp downstream
Tssr41037	transcription start site region 41037	1941 bp downstream