rs241265115 SNP Detail

Summary

• ID
  rs241265115
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92472124 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCGGG GGCACATAGC AGATATCCTG
  Y
  GTCTCAAGTA TTTACATTAT GATTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321612241	CHEV_5_92753291	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241265115					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92472124 () rs orientation: forward

Symbol	Name	Function Class
Cxcl9	C-X-C motif chemokine ligand 9	within coordinates
Tssr47287	transcription start site region 47287	1274 bp downstream
Tssr47288	transcription start site region 47288	486 bp downstream
Tssr47289	transcription start site region 47289	476 bp downstream
Tssr47290	transcription start site region 47290	461 bp downstream
Tssr47291	transcription start site region 47291	419 bp downstream
Tssr47292	transcription start site region 47292	852 bp upstream
Tssr51864	transcription start site region 51864	1523 bp upstream
Tssr51865	transcription start site region 51865	1439 bp upstream
Tssr51866	transcription start site region 51866	1159 bp upstream
Tssr51867	transcription start site region 51867	557 bp upstream
Tssr51868	transcription start site region 51868	511 bp upstream
Tssr51869	transcription start site region 51869	469 bp upstream
Tssr51870	transcription start site region 51870	419 bp upstream
Tssr51871	transcription start site region 51871	384 bp upstream
Tssr51872	transcription start site region 51872	847 bp downstream