rs241267419 SNP Detail

Summary

• ID
  rs241267419
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:108636774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGTGGGG GCAGTGAGGC
  ACCCTGAAAG GCGGGAGGAG ATGGGTGCGC GCCAGTCGGG TGCCAGGCCA CCCGCAGGCT
  GCGCCTGGGA CCTGAGCTCC CGGGAGAGTC CGGGGTGGGG GTGGGGGGAG GGGGTCGGCA
  CGGCTCACAC GGTCCACGGT CAGGTGCGCG CGGCGTGCTC GGCGGCGGCC TCGGCTGCCC
  Y
  AGCTCCTGGC CACCAGCCCG CTTCCCATGG GGTGACATCC GCCCCGCCCT CGGTCCCTCC
  CCAAGGCGGG CAATTCCTGG ACACTGAGGC TGAGCGCTGG GGGGGGGGGG GGGGGGGGGG
  CTGGGAAGCC AGGACGGAAA GAAACCCCAG CCTCTGGAGA AGGCTAAGGG GGGCCGACGA
  CTCCCTCAGC TGCGCACCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369592094	MGP_WTSI_6_108609807	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241267419					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369592094	MGP_WTSI_6_108609807	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108636774 () rs orientation: forward

Symbol	Name	Function Class
0610040F04Rik	RIKEN cDNA 0610040F04 gene	within coordinates
4833447P13Rik	RIKEN cDNA 4833447P13 gene	273 bp upstream
Bhlhe40	basic helix-loop-helix family, member e40	816 bp upstream
Cpgi17812	CpG island 17812	within coordinates
Gm17055	predicted gene 17055	220 bp downstream
Rr399817	regulatory region 399817	1769 bp upstream
Rr636153	regulatory region 636153	1303 bp distal
Rr636154	regulatory region 636154	802 bp distal
Rr636155	regulatory region 636155	within coordinates
Rr636156	regulatory region 636156	326 bp proximal
Rr636157	regulatory region 636157	911 bp proximal
Rr636158	regulatory region 636158	1096 bp proximal
Rr636159	regulatory region 636159	1790 bp proximal
Tssr58067	transcription start site region 58067	1192 bp downstream
Tssr58068	transcription start site region 58068	1143 bp downstream
Tssr58069	transcription start site region 58069	1043 bp downstream
Tssr58070	transcription start site region 58070	1000 bp downstream
Tssr58071	transcription start site region 58071	146 bp downstream
Tssr58072	transcription start site region 58072	621 bp upstream
Tssr58073	transcription start site region 58073	667 bp upstream
Tssr58074	transcription start site region 58074	706 bp upstream
Tssr58075	transcription start site region 58075	803 bp upstream
Tssr58076	transcription start site region 58076	959 bp upstream
Tssr58077	transcription start site region 58077	1042 bp upstream
Tssr58078	transcription start site region 58078	1934 bp upstream
Tssr62390	transcription start site region 62390	391 bp upstream
Tssr62391	transcription start site region 62391	within coordinates