rs241279972 SNP Detail

Summary

• ID
  rs241279972
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:9814186 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCCAACAC CTGTCTCTGC
  CTTTCTTCCC TTCCCTTGAT GCCTCATGTC ACCTGGATGT TTATGCTCCA AATGCATATG
  TTAAAATCCT AAGTATTAAG AGTACTGGCC TCCACAGTGA TTAAGTCATA AGAATAGAAT
  TGCATCCGGA TCTTTATTTA AAAAAAAAAA AAAAAATCTC AGAGAGCTAG CCAGCTAGCC
  R
  GCTAGCCAGC TCCTAGCCCA GCCAGAAGCT GCCCCTAACA AACACAGAGC CTACTTCACC
  TTGTTCAGAG AACCAACTGT AAGAAACTTC TTGGACTCCT ATACTGAGTA GTAGCTTTTG
  TTATTGCAGG TCTGCCAAAC TCAGGAGTCA CCCTCCTCCT TTAATGACTG ATAATCTGAA
  AAAGCAGGCG AGCAACAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395370695	MGP_WTSI_16_9996415	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241279972					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395370695	MGP_WTSI_16_9996415	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:9814186 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7945	CpG island 7945	295 bp distal
Gm30668	predicted gene, 30668	887 bp downstream
Grin2a	glutamate receptor, ionotropic, NMDA2A (epsilon 1)	762 bp upstream
Tssr139893	transcription start site region 139893	1755 bp upstream
Tssr139894	transcription start site region 139894	1310 bp upstream
Tssr139895	transcription start site region 139895	1234 bp upstream
Tssr139896	transcription start site region 139896	1018 bp upstream
Tssr139897	transcription start site region 139897	979 bp upstream
Tssr139898	transcription start site region 139898	950 bp upstream
Tssr139899	transcription start site region 139899	922 bp upstream
Tssr139900	transcription start site region 139900	879 bp upstream
Tssr139901	transcription start site region 139901	803 bp upstream
Tssr139902	transcription start site region 139902	773 bp upstream
Tssr139903	transcription start site region 139903	741 bp upstream
Tssr139904	transcription start site region 139904	653 bp upstream
Tssr139905	transcription start site region 139905	597 bp upstream
Tssr139906	transcription start site region 139906	504 bp upstream