rs241281398 SNP Detail

Summary

• ID
  rs241281398
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:7281488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAGCTCCC ATGAGCGCCT
  GGGCCCGACT TCCTGTCCAA AATGGAGGCA CTTCCTGTAT CTCACAAAGT ACAACCTCCC
  GGGGATTGAC CGATGGAAAA CGCGACCGCC TCGCGGGGTC GGATCCACCA GCCTGGCCGG
  CTTCCCCTCA CCCTGGCCGG GATGAAGCAG GCACATCCGA CCCCTTGGAG GAAGTTTTTT
  Y
  CGGCGTGCTC TCTGTCGCCA CCTGGTGGTG ACAGAGAAGA ATGCGGTCAT CGTGACCGTT
  CGATTTTCCT TTTTTCAAAT GACACTTGTT TTTGGTTTTT GATACTTTTT AAAAGAATCT
  ACGTGCACAT TCATTTTTCT TTTATTATCA TTGATGGCTC ACCACTCTTT GCATATGTGT
  GAACCCAGAA TATGTCAACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	I/LnJ	KK/HlJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	RIIIS/J	SEA/GnJ	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss370610680	MGP_WTSI_7_7231200	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	I/LnJ	KK/HlJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	RIIIS/J	SEA/GnJ	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs241281398					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370610680	MGP_WTSI_7_7231200	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:7281488 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18306	CpG island 18306	within coordinates
Gm45844	predicted gene 45844	200 bp upstream
Tssr64464	transcription start site region 64464	489 bp downstream
Tssr70610	transcription start site region 70610	444 bp upstream
Tssr70611	transcription start site region 70611	403 bp upstream