rs241287993 SNP Detail

Summary

• ID
  rs241287993
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:15540341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAATGTTC AACATCCTTA
  ATCATCAGGG AAATGCAAAT CAATACAAGT CATATATATT ATATATGTAT GTGTATATAT
  TTATATGACA TAATACAGAC AATAGAGAAA TCACACAGAT ACATGTACTA TATACAAGTC
  ACACATATAA AAATATATGT GTATATATGA CATAGAAAGC ACACATGATA TAGAAATCAA
  C
  ACACTGATAC ATGTACTGAT ATATATGTAT ATATATATCA GTATATACAC ATATATATGT
  ATATATCAGT ACATGTATCA TATATATATA TGTATATACA TATATATATA TATCACATAC
  ATAAATAGGT GTGCAGCAAG CAGACTTTCT AAGCACTTGG ATGGGAATGC TGCTGGCTTG
  CTTTAGGAAC ATAACTGTTT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ	SWR/J	ZALENDE/EiJ
ss376737745	MGP_WTSI_9_15433489	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ	SWR/J	ZALENDE/EiJ
rs241287993					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376737745	MGP_WTSI_9_15433489	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:15540341 () rs orientation: forward

Symbol	Name	Function Class
4930540M03Rik	RIKEN cDNA 4930540M03 gene	within coordinates
Cpgi21372	CpG island 21372	825 bp distal
Deup1	deuterosome assembly protein 1	1112 bp upstream
Rr674358	regulatory region 674358	1153 bp distal
Rr674359	regulatory region 674359	1100 bp distal
Rr674360	regulatory region 674360	716 bp distal
Tssr83870	transcription start site region 83870	1075 bp downstream
Tssr88249	transcription start site region 88249	1211 bp upstream
Tssr88250	transcription start site region 88250	1194 bp upstream
Tssr88251	transcription start site region 88251	1161 bp upstream
Tssr88252	transcription start site region 88252	1138 bp upstream
Tssr88253	transcription start site region 88253	1123 bp upstream
Tssr88254	transcription start site region 88254	734 bp upstream
Tssr88255	transcription start site region 88255	704 bp upstream