rs241290277 SNP Detail

Summary

• ID
  rs241290277
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:4642112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGATACTA ATGTTTGAAA
  ACATCCATTT ATTTATGGGA TTTTTAAAAA ACAATTTTTA TATAGCCTAG ACTGACCTCA
  AATTCACAAT CCTTCTCAGC AGTCAGACTG ATGCGACTCG TTCTCTGTGT GCAGGGGTTA
  CAGGCACGCA CCAGTTTACG TTATGAGTTT TGCATCTCAG TACACTTCCT TCCATGGAAA
  Y
  CTTACACTCC CATTTTGCCC ATTAGGGACC ATCATTTCCT CATCCTCAAC CTTAAGAAAG
  CTTTTTTTTT GTCCAGGGGG TGCTGTTGCC TCTGTCAAAC AGCAGATAAA GAATGGTGAT
  TTGAGTGAGG AAACCACAGA ATAGAAATAA GTTCTAAGTA TGAGTTTCTC CTATTAGATG
  GGTAAGGATG TTTAGCTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323874148	CHEV_12_4598918	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241290277					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:4642112 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4378	CpG island 4378	461 bp proximal
Gm3625	predicted gene 3625	within coordinates
Itsn2	intersectin 2	680 bp upstream
Rr256467	regulatory region 256467	within coordinates
Rr265387	regulatory region 265387	88 bp proximal
Tssr3767	transcription start site region 3767	1686 bp upstream
Tssr112557	transcription start site region 112557	517 bp upstream
Tssr112558	transcription start site region 112558	538 bp upstream
Tssr112559	transcription start site region 112559	681 bp upstream
Tssr112560	transcription start site region 112560	788 bp upstream
Tssr112561	transcription start site region 112561	880 bp upstream
Tssr112562	transcription start site region 112562	1024 bp upstream
Tssr112563	transcription start site region 112563	1748 bp upstream
Tssr115637	transcription start site region 115637	399 bp downstream
Tssr115638	transcription start site region 115638	1574 bp downstream
Tssr115639	transcription start site region 115639	1590 bp downstream
Tssr115640	transcription start site region 115640	1625 bp downstream
Tssr115641	transcription start site region 115641	1664 bp downstream
Tssr115642	transcription start site region 115642	1680 bp downstream