rs241296266 SNP Detail

Summary

• ID
  rs241296266
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:65520004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACACAGG CATACATACA
  TATATGCACA GGTGGAACAT GGCCCTGTGA GATCATTTGT GAACTAATGA TTATTACTTT
  GGTTGAAAGT TGAATGCCAC AGACTGCTGT GTGCAATTGT AACCTCCCCC CTCAGCCTGA
  AACCTGGCTG AACAAGTTTC ACTGTTATCA GGAAGAAAGC ATCGGGGTGG AGTCTGCCAC
  Y
  CTATCGTTCT GTCACGCCCA CTTCTACTGC CCACCGCCTA GCTGTTCCGG AGCTATCATG
  TGGTCACCTG AAATTTTACT CCAGGATGAT TGGCCGGAAT GGCCCCCTTC CCCTCCTTCA
  TAACTCAGTG CACGAATTAG TAAAATTGAG CTTTGATCAG AACCTGGTTT AGCTCTCTCA
  CGCTTAGCTC TCTCTTTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325657204	CHEV_18_65546587	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241296266					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:65520004 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alpk2	alpha-kinase 2			Intron
				Noncoding-Transcript-Variant
D18Mit182	DNA segment, Chr 18, Massachusetts Institute of Technology 182			1617 bp distal
Rr539524	regulatory region 539524			within coordinates
Tssr151600	transcription start site region 151600			890 bp downstream
Tssr151601	transcription start site region 151601			834 bp downstream