rs241299599 SNP Detail

Summary

• ID
  rs241299599
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:177809991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTGACCA GTTAACTGTC
  TGTCCACAGA TCACCTCTTT GCTCATTATG TTCTAGCCAC AGAGAACTTT TATTTTGTTC
  CTTAAATACA GAAAACATGT CTTATGTCTA TGTACTTATG TCTCCTCTAA TTGGAATTCT
  TGGCTTTCTT ATTTTTGACT AGCTTTCTGT CATTCAGATT CTAGCTTAAA ACTAGTCATT
  S
  CCCACACATC CTAAGATAAC TCTAAATTAT CTCAATTTTT CTACAAAATA CTCATTGCTG
  GAATTTTGTT TGTCTCCCGT GTCTGTTCAG TTGCTGAATT CCCAGGTCTA CCATATTACA
  TGGCATACAC TAGGAACACA AAATATATTT GTTGAATGGG TGCGCAAACA CTGTGTCCTA
  GGACTGAGCT AATCTATGAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ZALENDE/EiJ
ss352531612	MGP_WTSI_1_179912556	EVA_MGPV3	EVA_MGPV3	f	SNP	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G	G	G	C	G	G	G	G	C	G	G	G	G	G	C	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ZALENDE/EiJ
rs241299599					SNP	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G	G	G	C	G	G	G	G	C	G	G	G	G	G	C	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352531612	MGP_WTSI_1_179912556	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:177809991 () rs orientation: forward

Symbol	Name	Function Class
Catspere2	cation channel sperm associated auxiliary subunit epsilon 2	998 bp upstream
Cpgi1085	CpG island 1085	663 bp proximal
Gm69850	predicted gene, 69850	within coordinates
Rr25806	regulatory region 25806	734 bp distal
Rr29061	regulatory region 29061	409 bp proximal
Rr396636	regulatory region 396636	619 bp upstream
Tssr10371	transcription start site region 10371	1002 bp upstream
Tssr10372	transcription start site region 10372	1041 bp upstream