About   Help   FAQ
rs241302310 SNP Detail
Summary
  • ID
    rs241302310
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr6:123260770 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGTTCTTCCT GGAGTTTGAA
GAGTCCCTTA TGGTGGCACA GTCCTCCACC AAAACTATAT TGTTGGGCTC CCCAGCATCC
CAGAAGCTGT GAAGGAAAAA CACAGGAGAT CTTAAATATC AGAAATAGCA GCCTTAACAT
AGCAAACAAC TTACATATTT GTTATTTAAC TATCATTTTG GGAGATGGAA ATTATAATCT
S
CATTTTATCA ATGAGAAAAC CCATTTGCCT ACATCATCAG ATGGTGGGAC ATTACTGGAT
TTTTATGCTG TTATGCAGAT CTATAGATTT AAACTCATAA AGGGGCATCA TGGTGAGTAC
TGCTGGCCTG GCATATGTGC TGCCTCTGTT CTTCTACCTT ACACCAATAT TACTTTTACT
GCTCTGCCAG AGTTTGTTTT                                            

S = C/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss369922418 MGP_WTSI_6_123233829 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C G C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs241302310 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C G C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss369922418 MGP_WTSI_6_123233829 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:123260770 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Clec4e C-type lectin domain family 4, member e within coordinates
Tssr58808 transcription start site region 58808 1031 bp downstream
Tssr58809 transcription start site region 58809 394 bp downstream
Tssr58810 transcription start site region 58810 369 bp downstream
Tssr58811 transcription start site region 58811 280 bp downstream
Tssr63020 transcription start site region 63020 1307 bp upstream
Tssr63021 transcription start site region 63021 1229 bp upstream
Tssr63022 transcription start site region 63022 1190 bp upstream
Tssr63023 transcription start site region 63023 1135 bp upstream
Tssr63024 transcription start site region 63024 1037 bp upstream
Tssr63025 transcription start site region 63025 1005 bp upstream
Tssr63026 transcription start site region 63026 984 bp upstream
Tssr63027 transcription start site region 63027 946 bp upstream
Tssr63028 transcription start site region 63028 921 bp upstream
Tssr63029 transcription start site region 63029 893 bp upstream
Tssr63030 transcription start site region 63030 837 bp upstream
Tssr63031 transcription start site region 63031 807 bp upstream
Tssr63032 transcription start site region 63032 776 bp upstream
Tssr63033 transcription start site region 63033 762 bp upstream
Tssr63034 transcription start site region 63034 736 bp upstream
Tssr63035 transcription start site region 63035 721 bp upstream
Tssr63036 transcription start site region 63036 654 bp upstream
Tssr63037 transcription start site region 63037 621 bp upstream
Tssr63038 transcription start site region 63038 596 bp upstream
Tssr63039 transcription start site region 63039 528 bp upstream
Tssr63040 transcription start site region 63040 484 bp upstream
Tssr63041 transcription start site region 63041 437 bp upstream
Tssr63042 transcription start site region 63042 417 bp upstream
Tssr63043 transcription start site region 63043 400 bp upstream
Tssr63044 transcription start site region 63044 365 bp upstream
Tssr63045 transcription start site region 63045 285 bp upstream
Tssr63046 transcription start site region 63046 272 bp upstream
Tssr63047 transcription start site region 63047 251 bp upstream
Tssr63048 transcription start site region 63048 217 bp upstream
Tssr63049 transcription start site region 63049 193 bp upstream
Tssr63050 transcription start site region 63050 148 bp upstream
Tssr63051 transcription start site region 63051 126 bp upstream
Tssr63052 transcription start site region 63052 1376 bp downstream
Tssr63053 transcription start site region 63053 1486 bp downstream
Tssr63054 transcription start site region 63054 1653 bp downstream
Tssr63055 transcription start site region 63055 1680 bp downstream
Tssr63056 transcription start site region 63056 1721 bp downstream
Tssr63057 transcription start site region 63057 1754 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory