rs241310574 SNP Detail

Summary

• ID
  rs241310574
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:135643157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCGAGGTC CCTCATTTTG
  GTGGATTTTT CTGCCTTTTT TATGTTTGCA AACTGCATTA ATAAAACTGA GAATAACTAG
  GACAGTGCTA GTATCTAAAG GAAAGGGCTT CTGTAAGAAA AGGCCTGCCG ATTTAATCAA
  ATTCCTTTCT TTTCTTTGCC TTTTTTCGTT TTTTTGTTTG TTTTTGAGGC CTGTTGTAAC
  W
  AGGTAGCCCT GGCTGGCCTG GAACTCGGAG ATCCACCTGT CCCTTCACGG CCTTCGAGCG
  CTGGGATTAA AAGCATGCGC CACTCCACCC AGTCCGATTT AATTTTAGAC CCTAGAGATG
  ATCATTATTC CCACATTATA GTCCACCAAA ATAAACTTCT TCCATGGTTA AGATTCAGAA
  CTATATTAGT AACGTAAAAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss404681720	MGP_WTSI_X_133276947	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241310574					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404681720	MGP_WTSI_X_133276947	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:135643157 () rs orientation: forward

Symbol	Name	Function Class
BC065397	cDNA sequence BC065397	549 bp upstream
Cpgi22954	CpG island 22954	163 bp distal
Morf4l2	mortality factor 4 like 2	within coordinates
Rr406170	regulatory region 406170	885 bp downstream
Tssr162050	transcription start site region 162050	544 bp downstream
Tssr164188	transcription start site region 164188	1293 bp upstream
Tssr164189	transcription start site region 164189	1280 bp upstream
Tssr164190	transcription start site region 164190	1101 bp upstream
Tssr164191	transcription start site region 164191	959 bp upstream
Tssr164192	transcription start site region 164192	332 bp upstream
Tssr164193	transcription start site region 164193	733 bp downstream
Tssr164194	transcription start site region 164194	1267 bp downstream