rs241324817 SNP Detail

Summary

• ID
  rs241324817
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:103874509 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTGG GGCCTGAATG TTTTTTGGGG
  R
  GTTCAAAGCT TGGCCTTACA CAGCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320859270	CHEV_3_103771116	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241324817					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:103874509 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13642	CpG island 13642	728 bp proximal
Phtf1	putative homeodomain transcription factor 1	917 bp upstream
Phtf1os	putative homeodomain transcription factor 1, opposite strand	within coordinates
Rr582453	regulatory region 582453	427 bp proximal
Rr582454	regulatory region 582454	1264 bp proximal
Rr582455	regulatory region 582455	1441 bp proximal
Rr582456	regulatory region 582456	1530 bp proximal
Rr582457	regulatory region 582457	1607 bp proximal
Rsbn1	rosbin, round spermatid basic protein 1	557 bp downstream
Tssr31039	transcription start site region 31039	752 bp upstream
Tssr31040	transcription start site region 31040	1134 bp upstream
Tssr31041	transcription start site region 31041	1436 bp upstream
Tssr34872	transcription start site region 34872	1085 bp downstream