rs241327538 SNP Detail

Summary

• ID
  rs241327538
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94967262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAAGGCGA AGGCGACCCG
  GCCGCAAGCC GCCACCATCA AGGCCAGAGC GCGGAGCAGC CAGCCAGGGG CGCGGGGCAC
  GCGGCAGGGG CCGGGGCCCA TGGCTGCGGG CCGGGCCGTA AGGGGCCGGG CGAAATCGCT
  AGAGGGCTCA GCACCGGGAG TGATGAACGG TTCACCTGCT CCAGGCGCCA CCAGAGGACA
  Y
  CCGAGCCCGC AGAGCCGCTG CACCGGTAGT CAGGCAATTT TTTACCCTAG TCCGGGTCAC
  TTTCACGTCT GCTCCGGGTG CTTTTCCAAT CCGTTTTCCA GATCCGTGGA TCTACTCTCA
  CGTTGGTTCG GTGGACGGGT CACCGTTCCG AGCTCCGAGC ACCCCACACC CTAGATGGTC
  CCGGCCGCGC CCCCTTGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323817652	CHEV_11_94937750	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241327538					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94967262 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3575	CpG island 3575	within coordinates
Gm53645	predicted gene, 53645	within coordinates
Gm57362	predicted gene, 57362	within coordinates
Itga3	integrin alpha 3	within coordinates
Tssr3652	transcription start site region 3652	156 bp downstream
Tssr104346	transcription start site region 104346	509 bp upstream
Tssr110254	transcription start site region 110254	130 bp downstream
Tssr110255	transcription start site region 110255	207 bp downstream
Tssr110256	transcription start site region 110256	221 bp downstream
Tssr110257	transcription start site region 110257	367 bp downstream