rs241339322 SNP Detail

Summary

• ID
  rs241339322
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:54800091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAGAAATTC TACACTTTCC TGAAGGTGAG
  AGTGGGTAAT ATGGAGGAAG CTCCCCTTAG CGGCTTAGGC CCTGGCCCAC AGGAATGTCT
  TGGCATTGGT CTAGTAGACC CATGAGAGGG CTTGGCAGAC CCAGTCCTAT CACCCTACTG
  Y
  AGACGTAAGA CAGGGTCCAC AGCCTTCCAG TCAGCATAGA GATGGACGGA CAGTCAAGTG
  TTCTTGTTCC CGAACTGGGC CCTTCCCTCA GTGCCAGTTT TCTCCCTGGA AGGGAGGGGA
  GGTCAGGAGG AGCCTCAAGT CAGACTAACG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323674146	CHEV_11_54722767	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241339322					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54800091 () rs orientation: forward

Symbol	Name	Function Class
Gpx3	glutathione peroxidase 3	within coordinates
Tnip1	TNFAIP3 interacting protein 1	1520 bp downstream
Tssr3502	transcription start site region 3502	376 bp downstream
Tssr3503	transcription start site region 3503	850 bp upstream
Tssr101561	transcription start site region 101561	708 bp downstream
Tssr101562	transcription start site region 101562	661 bp downstream
Tssr101563	transcription start site region 101563	649 bp downstream
Tssr101564	transcription start site region 101564	628 bp downstream
Tssr101565	transcription start site region 101565	198 bp downstream
Tssr101566	transcription start site region 101566	152 bp downstream
Tssr101567	transcription start site region 101567	198 bp upstream
Tssr101568	transcription start site region 101568	274 bp upstream
Tssr101569	transcription start site region 101569	357 bp upstream
Tssr101570	transcription start site region 101570	379 bp upstream
Tssr101571	transcription start site region 101571	433 bp upstream
Tssr101572	transcription start site region 101572	528 bp upstream
Tssr101573	transcription start site region 101573	565 bp upstream
Tssr101574	transcription start site region 101574	579 bp upstream
Tssr101575	transcription start site region 101575	627 bp upstream
Tssr101576	transcription start site region 101576	641 bp upstream
Tssr101577	transcription start site region 101577	670 bp upstream
Tssr101578	transcription start site region 101578	753 bp upstream
Tssr108006	transcription start site region 108006	1980 bp upstream
Tssr108007	transcription start site region 108007	691 bp upstream
Tssr108008	transcription start site region 108008	630 bp upstream
Tssr108009	transcription start site region 108009	614 bp upstream
Tssr108010	transcription start site region 108010	194 bp upstream
Tssr108011	transcription start site region 108011	392 bp downstream
Tssr108012	transcription start site region 108012	426 bp downstream
Tssr108013	transcription start site region 108013	520 bp downstream
Tssr108014	transcription start site region 108014	527 bp downstream
Tssr108015	transcription start site region 108015	610 bp downstream
Tssr108016	transcription start site region 108016	662 bp downstream
Tssr108017	transcription start site region 108017	713 bp downstream
Tssr108018	transcription start site region 108018	728 bp downstream
Tssr108019	transcription start site region 108019	764 bp downstream
Tssr108020	transcription start site region 108020	820 bp downstream
Tssr108021	transcription start site region 108021	840 bp downstream
Tssr108022	transcription start site region 108022	851 bp downstream
Tssr108023	transcription start site region 108023	1104 bp downstream