rs241342979 SNP Detail

Summary

• ID
  rs241342979
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:157395600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CATTTCAGC AATTTTCCTC CCGGTCCTAG
  TTTTGTGCAC ATTTTCTATG TGGTTCAGAC TAATTATATT TCTCTCACTT TCTTAGCGGG
  TCCTATTTTT TTCACATTCT GACATCTGGC TATCAAGTTA GATTGCTGTA GGCATCATAT
  Y
  GCCATGGTAA CTACTGAACC TAATGATTCA GATGGATGGA ACATCAGTAT AATAAATAAT
  GGAAAGTGTT TCCTAAAACG TCATCCTTTC CGTAAGAGGG GAGGAATGAA TGCCTCATCG
  TGCTAATACC TGCCTTCCTA CCTCAGGCCG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320074420	CHEV_1_159498161	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241342979					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:157395600 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr421413	regulatory region 421413			1653 bp proximal
Sec16b	SEC16 homolog B, endoplasmic reticulum export factor			mRNA-UTR
				Noncoding-Transcript-Variant