rs241345407 SNP Detail

Summary

• ID
  rs241345407
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:69727735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAGCAAAG AATGGAGATG
  GCCGTGAAAA GCAGCCCTTT ATGAACTGTT CTCATGTAGT ATTTTGAACT TACATTTGGG
  TTGATCTTAA TCAGAGTGTG ATACTTGGGC CAAACGAAAC CGATGAGAGC GAATTAAATG
  TGTGTGTGTG CTGATATATG CATGTAAGCC TATATATACA TATATACACA CACACATATA
  Y
  GTAAATATGC ACAGATGTCT GCATATTGCT TATTTCTGGT GGGCTACACT GGTATGTATA
  CATATACAAG AGCTTTCGAG AGTGTAGCTT AAGGAGTTTA ACAGTCATCC AGGTCTATGA
  ACTATTACTT TTATTTTGAA GTATCAGTAA ATCATCACAA GTTAATAATA CTTATCCCTT
  TTAAAGTCCC CCTTTAAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401095004	MGP_WTSI_18_69754318	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	T	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241345407					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	T	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401095004	MGP_WTSI_18_69754318	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:69727735 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10192	CpG island 10192	1846 bp distal
Cpgi10193	CpG island 10193	1051 bp distal
Rr405727	regulatory region 405727	1096 bp downstream
Tcf4	transcription factor 4	within coordinates
Tssr151833	transcription start site region 151833	1815 bp downstream
Tssr151834	transcription start site region 151834	1711 bp downstream
Tssr151835	transcription start site region 151835	1693 bp downstream
Tssr151836	transcription start site region 151836	1653 bp downstream
Tssr151837	transcription start site region 151837	1443 bp downstream
Tssr151838	transcription start site region 151838	1390 bp downstream
Tssr151839	transcription start site region 151839	1214 bp downstream
Tssr151840	transcription start site region 151840	1179 bp downstream
Tssr151841	transcription start site region 151841	1159 bp downstream
Tssr151842	transcription start site region 151842	1132 bp downstream
Tssr151843	transcription start site region 151843	1107 bp downstream
Tssr151844	transcription start site region 151844	1057 bp downstream
Tssr151845	transcription start site region 151845	1026 bp downstream
Tssr153821	transcription start site region 153821	1322 bp upstream