rs241347811 SNP Detail

Summary

• ID
  rs241347811
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84625846 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCTGCCCT ACTTCTCCGA
  GTCCATCACC TGCAGTGTAG TTCTTACGTT GTGGAAATCT GCACCGGGCT TTTGCTCTCG
  CCATCAACCT AAAATTCAAT TTTTTTTTTC TTCCCTACCC ACCCCCTCCA AAACCAGACG
  CTTGAGGCGT TTATAGATAC TAACCTCTCC TCCGCTCCTG CAGCCTGGTC AGCTCCAGGA
  Y
  CCTGTCCGGT TGCCAAGGCT CTCTCTTCTG TTTGGGGGAG GGGGGCTGTT CTCATCCCAT
  CCTACCTACG CTCCAGTCCT GGCTTTGCGT CCCTCCCTCG TTTTTTTTTT TAATTAATTT
  ATTTATTTAT TTTTTTATTG TAGGTCTGGT CTCCCAGGGT AGCGGGATCC ACACCACATC
  CCCTTCCTGT CGCATCACCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375388190	MGP_WTSI_8_86423116	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241347811					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375388190	MGP_WTSI_8_86423116	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84625846 () rs orientation: forward

Symbol	Name	Function Class
Adgrl1	adhesion G protein-coupled receptor L1	888 bp upstream
Cpgi20661	CpG island 20661	1734 bp distal
Cpgi20662	CpG island 20662	168 bp proximal
Gm26721	predicted gene, 26721	within coordinates
Rr186961	regulatory region 186961	within coordinates
Tssr78300	transcription start site region 78300	741 bp upstream
Tssr78301	transcription start site region 78301	871 bp upstream
Tssr78302	transcription start site region 78302	879 bp upstream
Tssr78303	transcription start site region 78303	897 bp upstream
Tssr78304	transcription start site region 78304	1230 bp upstream
Tssr78305	transcription start site region 78305	1375 bp upstream
Tssr78306	transcription start site region 78306	1403 bp upstream
Tssr78307	transcription start site region 78307	1489 bp upstream