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rs241357858 SNP Detail
Summary
  • ID
    rs241357858
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr2:162895070 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTCTGTACTA GGAACCGGCT
    GATGCCTATA TCTTTCTTTT AACTGGGAGA CTTTTATCTG CATGACAAGA CCACCTGTTT
    GCCACATAAT TCCTTTCCTT ATCCCTAGTT AGCTTGTGTC ACCACCATTC CTACAGAAGT
    CCTTGGACCT CATTCCTTTT TGTACCCCAG GAAGCTTCAA ACGTCTGAGC CTTTGTATGA
    Y
    GTCATTATTT TACAGGACTC CAATGGATAT GCAAGTAATT AAACCTGAGT TTCCTCCCGT
    TAATCTATTT CCTATCCATT TAATTTGCAA ACAAGCCAAA GATGCTAGGA GGAAAGCCAT
    TTGCCCTTTC CTTACCCCTT TCCTTACTAT AAACTCTAGA ACTACAGTTT GGGGAAGTCA
    GTGCCTCAGT TTCTCCATCT                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss356397334 MGP_WTSI_2_162878886 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs241357858 SNP T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss356397334 MGP_WTSI_2_162878886 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:162895070 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi12626 CpG island 12626 1102 bp proximal
Gm75254 predicted gene, 75254 992 bp downstream
Mybl2 myeloblastosis oncogene-like 2 1537 bp upstream
Rr374192 regulatory region 374192 within coordinates
Rr397459 regulatory region 397459 1209 bp upstream
Rr569270 regulatory region 569270 1112 bp distal
Rr569271 regulatory region 569271 758 bp proximal
Rr569272 regulatory region 569272 1254 bp proximal
Rr569273 regulatory region 569273 1548 bp proximal
Tssr21431 transcription start site region 21431 1420 bp upstream
Tssr21432 transcription start site region 21432 1441 bp upstream
Tssr21433 transcription start site region 21433 1501 bp upstream
Tssr21434 transcription start site region 21434 1532 bp upstream
Tssr27277 transcription start site region 27277 1257 bp downstream
Tssr27278 transcription start site region 27278 1293 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory

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