rs241367573 SNP Detail

Summary

• ID
  rs241367573
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:143013944 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCGCCCT GCTCCTCGCC
  CTGCTCAGAG ACCGGCTCAG TTCCCAGCTC ATCACCCGGC TCAGCACCCG ACTCCTCGCC
  CTGCTCAGAG ACCTGCTCAG GGACCTGTTC CTCGCCGTCC CGAGTCGCCA CGTCCGGGTT
  CGCGTCCGGG ATCGGGTCCG GAGTCGGGTC GGAGGTCGCG ACCAGGGTCA CCTCCGGAAT
  Y
  GGGTCTGAGG TCAGATCTGA AGCCGGGGCC GGGGTCGCGG GTGGGGTGGG CTCCGCGACC
  ACGGCCGAGG CTGGGGCGCT GGGCGGCTGC TCAGGCGCCT CCTCTAGGCC GTCGGGGGCC
  TCGCCAGCCG GCGGCCCAGA ACGCGGGATG ACAGCCACGG CCACCGGGGG TGGCCGGGGC
  CCCAGCTGCA GGCGACAGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322476121	CHEV_7_150646112	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241367573					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:143013944 () rs orientation: forward

Symbol	Name	Function Class
Cdkn1c	cyclin dependent kinase inhibitor 1C	within coordinates
Cpgi19981	CpG island 19981	within coordinates
Gm44732	predicted gene 44732	within coordinates
Tssr70288	transcription start site region 70288	1479 bp downstream
Tssr70289	transcription start site region 70289	309 bp downstream
Tssr75936	transcription start site region 75936	1690 bp upstream
Tssr75937	transcription start site region 75937	1587 bp upstream
Tssr75938	transcription start site region 75938	1413 bp upstream
Tssr75939	transcription start site region 75939	1386 bp upstream
Tssr75940	transcription start site region 75940	1351 bp upstream
Tssr75941	transcription start site region 75941	1248 bp upstream
Tssr75942	transcription start site region 75942	863 bp upstream
Tssr75943	transcription start site region 75943	787 bp upstream
Tssr75944	transcription start site region 75944	29 bp downstream
Tssr75945	transcription start site region 75945	500 bp downstream
Tssr75946	transcription start site region 75946	782 bp downstream