rs241367855 SNP Detail

Summary

• ID
  rs241367855
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119068366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCTCCCA TCTCAGGTCA
  CAAGCACCCT CGGAACCCGG AGGCTCGCAC TGTGAAGGTG ACCCCCGCCT CGGGGAGGAG
  GGCGACGGCC CCTGGGAGCA CGATGGCGGG CCGCCGCCTG GCGCGGGCCA GCATCTCTGC
  GGTCGGCGTA TGGCTCCTTT GCGCGCTTGG CCTCCAGGCC ACCGAGGCCG AGCTGCCGTC
  S
  GCACCCGCTG AGCTTCCCGG GGGAGCCGCC TGCTTGAGCC GCTTTACCAG CGGGGTGCCG
  TCCTTTGTGC TGGACACCGA AGCCTCAGTC AGCAACGGGG CCACCTTCCT GGGTTCCCCG
  ACGGCGCGCC GCGGCTGGGA CTGCGTGCGC TCCTGCTGCA CCACTCAGAA CTGCAACCTG
  GCGCTGGTGG AGCTGCAGCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355426201	MGP_WTSI_2_119063621	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241367855					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355426201	MGP_WTSI_2_119063621	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119068366 () rs orientation: forward

Symbol	Name	Function Class
9130007G19Rik	RIKEN cDNA 9130007G19 gene	610 bp upstream
Cpgi12109	CpG island 12109	within coordinates
Rr563445	regulatory region 563445	621 bp distal
Rr563446	regulatory region 563446	809 bp distal
Rr563447	regulatory region 563447	322 bp distal
Rr563448	regulatory region 563448	485 bp distal
Rr563449	regulatory region 563449	243 bp distal
Rr563450	regulatory region 563450	192 bp proximal
Rr563451	regulatory region 563451	1507 bp proximal
Spint1	serine protease inhibitor, Kunitz type 1	Coding-Synonymous
Tssr19609	transcription start site region 19609	668 bp downstream
Tssr19610	transcription start site region 19610	511 bp downstream
Tssr19611	transcription start site region 19611	465 bp downstream
Tssr19612	transcription start site region 19612	411 bp downstream
Tssr19613	transcription start site region 19613	377 bp downstream
Tssr19614	transcription start site region 19614	361 bp downstream
Tssr19615	transcription start site region 19615	333 bp downstream
Tssr19616	transcription start site region 19616	240 bp downstream
Tssr19617	transcription start site region 19617	236 bp downstream
Tssr19618	transcription start site region 19618	175 bp downstream
Tssr19619	transcription start site region 19619	145 bp downstream