rs241367905 SNP Detail

Summary

• ID
  rs241367905
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:68800537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTTTCCAG CCCGCTCTCT
  TCGCTCATCC CGCCGCCTTG CAGCCCGCGG CCCGCAGCGC GGTGATCTGG GGCTCCACGG
  GGCCGGGCTG AGCGGCCGCC GCCCGCCCCG AGCCGCCGCC GCCGCCCGGC CGCCCGCCCG
  GCTTAGCCGC CGAGGCGCCT GGCGGGGTCC GCGCCGCCGG GGGCGGGCGG CTCGGGCTGC
  K
  GGGCGGCTGG CGCGCGCGCG CCGCGGGGCG GAGAAGCGGG CCCGGCGGCC GGCGAGCATG
  GAGGAGAAGT ACCTGCCGGA GCTGATGGCG GAGAAGGACT CTCTGGACCC CTCCTTCACG
  CACGCCCTGC GCTTGGTGAA CCGAGGTGAG CTCGGCGGCC GTTAACGGCA CCCGCGTAGC
  CGGCTCCGGA GAGGAGGGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss394433431	MGP_WTSI_15_68759118	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	T	G	G	T	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs241367905					SNP	G	G	T	G	G	T	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394433431	MGP_WTSI_15_68759118	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:68800537 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7148	CpG island 7148	within coordinates
Khdrbs3	KH domain containing, RNA binding, signal transduction associated 3	within coordinates
Tssr131505	transcription start site region 131505	295 bp downstream
Tssr131506	transcription start site region 131506	279 bp downstream
Tssr131507	transcription start site region 131507	267 bp downstream
Tssr131508	transcription start site region 131508	236 bp downstream
Tssr131509	transcription start site region 131509	205 bp downstream
Tssr131510	transcription start site region 131510	15 bp upstream
Tssr131511	transcription start site region 131511	671 bp upstream