rs241391446 SNP Detail

Summary

• ID
  rs241391446
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:184542506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGTCGCAG CCTCTGTTAG
  CCTGTGTCCT CTGCTGAAGG AGAGGCCTGA GGATCCTGAT ACGCAGCCTT CCAGTGATGC
  CCAGAGCTGG TGGGAGACCA GACCTGAAGA GAGCAGAGCT GCTGAACCTT CGCTGAAGTC
  CCGGCGACAG GGGTCACTCC TCAGCTGGAC TCTTAGTCGC TGTTTACAAA TCCCAGGTTG
  S
  CCCCCCCCCC ACCCAGTGCA GAACCTTTAT CTGACAAGAG CCTTGGGGAA ATAACACTCA
  CAGCTTATTT TCTTAAGCTG TCATGCATGC TCAACTACTG CACTAACAGG GATGAGCCGT
  GCCTAGGATC CAGGATCTAT TGTCTTAGTT TTTCTAAATT TAAGACTATC ACTGAGAGTA
  AAGTAACCAA GGACCAGTCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352675725	MGP_WTSI_1_186634188	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241391446					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352675725	MGP_WTSI_1_186634188	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184542506 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1161	CpG island 1161	352 bp proximal
Gm70890	predicted gene, 70890	1615 bp upstream
Mtarc1	mitochondrial amidoxime reducing component 1	Intron
Rr425290	regulatory region 425290	878 bp proximal
Rr425291	regulatory region 425291	1626 bp proximal
Tssr15650	transcription start site region 15650	671 bp downstream
Tssr15651	transcription start site region 15651	847 bp downstream
Tssr15652	transcription start site region 15652	861 bp downstream
Tssr15653	transcription start site region 15653	950 bp downstream
Tssr15654	transcription start site region 15654	977 bp downstream
Tssr15655	transcription start site region 15655	995 bp downstream