rs241393633 SNP Detail

Summary

• ID
  rs241393633
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138147821 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATATT TTAATCACCA GACACTGGAA
  Y
  CATTTAAAAG GATTAGGAGG CACGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320980169	CHEV_3_138105024	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241393633					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138147821 () rs orientation: forward

Symbol	Name	Function Class
Adh5	alcohol dehydrogenase 5 (class III), chi polypeptide	Intron
Cpgi13874	CpG island 13874	483 bp proximal
Gm64924	predicted gene, 64924	268 bp downstream
Rr398071	regulatory region 398071	874 bp upstream
Rr586135	regulatory region 586135	506 bp proximal
Rr586136	regulatory region 586136	543 bp proximal
Rr586137	regulatory region 586137	1044 bp proximal
Rr586138	regulatory region 586138	1493 bp proximal
Tssr31984	transcription start site region 31984	1025 bp upstream