rs241405503 SNP Detail

Summary

• ID
  rs241405503
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172036164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTGATATA CCACCGTAAG
  ACTTAGAATG TTGAGGCAGG ATTATTCCCA TCTTCGGCTA CATAGTGATA CCCTATCCAT
  AAACAACAAC AAAGGATGTT TCCTTATTTA GAAGCTTATT CGGGAGTTTG GTCCTTTCAT
  GCTCCCATCT TGTATATGTT TACTCCCACC TGAGCCTGTC CTGCGGAGTA CGGGTGCGCA
  Y
  GAGTCCTTTT TATAGAAGCC CAATAGATCT AAGTCTAGGG GATACTCTTG GTTCCAATAG
  CAATGCCCTC TCATTACGAC AACCACTACA CAGGCCAGAT CCTCCCAAAC TTACTCTGAT
  CAAAACAGTT TCTGAAACGG GGTTCCTTGC CTCTGCTTTT ACATGACCCC TCCTCCCTAA
  GTCTATCCTG GCTTTTGCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352400990	MGP_WTSI_1_174138728	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241405503					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352400990	MGP_WTSI_1_174138728	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172036164 () rs orientation: forward

Symbol	Name	Function Class
Casq1	calsequestrin 1	1297 bp downstream
Cpgi1038	CpG island 1038	1644 bp distal
Gm17224	predicted gene 17224	within coordinates
Pea15a	proliferation and apoptosis adaptor protein 15A	1866 bp upstream
Rr396578	regulatory region 396578	1057 bp downstream
Rr423485	regulatory region 423485	1804 bp distal
Rr423486	regulatory region 423486	1303 bp distal
Tssr294	transcription start site region 294	1964 bp upstream
Tssr295	transcription start site region 295	1914 bp upstream
Tssr296	transcription start site region 296	1838 bp upstream
Tssr297	transcription start site region 297	1804 bp upstream
Tssr10179	transcription start site region 10179	1726 bp upstream
Tssr15164	transcription start site region 15164	1932 bp upstream
Tssr15165	transcription start site region 15165	1842 bp upstream
Tssr15166	transcription start site region 15166	1811 bp upstream
Tssr15167	transcription start site region 15167	891 bp upstream
Tssr15168	transcription start site region 15168	1509 bp downstream
Tssr15169	transcription start site region 15169	1596 bp downstream
Tssr15170	transcription start site region 15170	1623 bp downstream
Tssr15171	transcription start site region 15171	1637 bp downstream
Tssr15172	transcription start site region 15172	1719 bp downstream
Tssr15173	transcription start site region 15173	1811 bp downstream
Tssr15174	transcription start site region 15174	1863 bp downstream