rs241407607 SNP Detail

Summary

• ID
  rs241407607
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:147022063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATATGGGTG GTGTTTGTAG
  AGGTTGTACT CAGATCCAAC TCAGACTGCT TAGGGAAGGC CGCACAGGGT GTGTTCTTTC
  TAAGTATTGC TCTCTGCAGG AGACACTGAG AACTAAGGAA GGAACCTCTT CAGGTGAAGG
  GTGAAGGCTG TGGGATAAGG TTCTGAACTG TTCTCGCCCC CCCCCACTAA TGTCAGATGG
  Y
  TACACCTCTG TAGTTCAAGT AAGGATGGAC AACCCCCCCC CCCCCAGCTA GCTTTGGTAA
  TCAAATGATT CTGCCTGGTG AAAGATGCCT TGGCTGCAGC TTAGCTGGGC TGAGCAGCCC
  CCTGGTTTCT TATCCTCTTG GGCCTTTCCA GAAGTATGTG GAGGTCCCTG TGACCATCAG
  TCTATTGGTG CATGAACATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320548193	CHEV_2_147005879	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241407607					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:147022063 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12376	CpG island 12376	1644 bp distal
Cpgi12377	CpG island 12377	1049 bp distal
Cpgi12378	CpG island 12378	674 bp proximal
Nkx2-2	NK2 homeobox 2	within coordinates
Rr406682	regulatory region 406682	147 bp proximal
Rr566759	regulatory region 566759	560 bp distal
Rr566761	regulatory region 566761	1854 bp distal
Rr566762	regulatory region 566762	1166 bp distal
Rr566763	regulatory region 566763	550 bp proximal