rs241407607 SNP Detail

Summary

• ID
  rs241407607
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:147022063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATATGGGTG GTGTTTGTAG
  AGGTTGTACT CAGATCCAAC TCAGACTGCT TAGGGAAGGC CGCACAGGGT GTGTTCTTTC
  TAAGTATTGC TCTCTGCAGG AGACACTGAG AACTAAGGAA GGAACCTCTT CAGGTGAAGG
  GTGAAGGCTG TGGGATAAGG TTCTGAACTG TTCTCGCCCC CCCCCACTAA TGTCAGATGG
  Y
  TACACCTCTG TAGTTCAAGT AAGGATGGAC AACCCCCCCC CCCCCAGCTA GCTTTGGTAA
  TCAAATGATT CTGCCTGGTG AAAGATGCCT TGGCTGCAGC TTAGCTGGGC TGAGCAGCCC
  CCTGGTTTCT TATCCTCTTG GGCCTTTCCA GAAGTATGTG GAGGTCCCTG TGACCATCAG
  TCTATTGGTG CATGAACATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320548193	CHEV_2_147005879	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241407607					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:147022063 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nkx2-2	NK2 homeobox 2			Intron
				Noncoding-Transcript-Variant
Rr406682	regulatory region 406682			147 bp proximal
Rr566759	regulatory region 566759			560 bp distal
Rr566761	regulatory region 566761			1854 bp distal
Rr566762	regulatory region 566762			1166 bp distal
Rr566763	regulatory region 566763			550 bp proximal