rs241427431 SNP Detail

Summary

• ID
  rs241427431
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40711819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCATTAAC TGATGAGTCT
  GGTGGAGCAG AGAGGGGACA GAGGTCACGC TGTCCCCTGT GGGACAGCGG AGGTGGGGAG
  GGGCGTTCGG CTCAGGGGTA AGCAGAGAGG ACTGGGCCAT TTCTTTGATA GAGGATCACA
  AACGATCCTG GGGACATGTG GCGAGCCAGG CAGATCGAGC CTCCGCACTG GGGGGGGGGG
  R
  AATCGAGGTG TCCCATTTTG TGGGGGGTGA GGGGTGGGGA AAGCCAGCGA GATAGCGCGG
  CGGCTTAGCC TCCCACAAGC TGGCAGCACG AAACAAGAAG CCTAGCAGTG CTCCTTAGTC
  TCAGGCTGGG GTGGACCAAG CCCGAGGCCG GGAAACCGCC GGGCTCAGGG AGAAGGACCG
  AGGGTCGTGT GGGGGAGGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322919695	CHEV_9_40608606	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241427431					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40711819 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21602	CpG island 21602	367 bp distal
Cpgi21603	CpG island 21603	within coordinates
Gm57042	predicted gene, 57042	within coordinates
Hspa8	heat shock protein 8	753 bp upstream
Rr206240	regulatory region 206240	within coordinates
Rr383256	regulatory region 383256	within coordinates
Tssr84479	transcription start site region 84479	1157 bp downstream
Tssr84480	transcription start site region 84480	417 bp downstream
Tssr84481	transcription start site region 84481	743 bp upstream
Tssr84482	transcription start site region 84482	1382 bp upstream
Tssr84483	transcription start site region 84483	1843 bp upstream
Tssr88972	transcription start site region 88972	239 bp downstream