rs241437166 SNP Detail

Summary

• ID
  rs241437166
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:65714184 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCGAGGCCG CGGCGGCGAG
  GAGCCCTGGG GCGGCGAGGC CCCGCTCGGC TCTTGCACAC AGACCCCGGC GGCGGGGAGG
  CGCGACACGC CCGTAGCATG GAAGCCTCCG CCGCCGCTCG CACTGCAGCG GGCGCAGCAG
  CAGCAGCCGC CGGCGGCGGC GCGCGGAGCA GAGGTCGCCC GAGCCACGGC CGGGACACCC
  R
  GGCTTGAGCG CTGCGGAGGC CCGCCCGGCC AGGGGGTGGG TGTGCGCCTG GGACAGGGGG
  CCGCGAGGGT GCGGGCGGAC GAGGGCGGGA GGGGGCATTT GGGCCCCTCG TGCCACCCCG
  CGGGTCACGG CGAGCGCGCG AGGCTCAGGC CCCTTGCCTT GGCCTGAGTG CGGCGGCCTG
  TCCCACCCTG GCTTTGGGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss400989042	MGP_WTSI_18_65740767	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241437166					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400989042	MGP_WTSI_18_65740767	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:65714184 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10151	CpG island 10151	within coordinates
Gm41760	predicted gene, 41760	369 bp upstream
Rr353047	regulatory region 353047	within coordinates
Rr393821	regulatory region 393821	1423 bp downstream
Tssr151678	transcription start site region 151678	713 bp downstream
Tssr151679	transcription start site region 151679	315 bp downstream
Tssr151680	transcription start site region 151680	296 bp downstream
Tssr151681	transcription start site region 151681	591 bp upstream
Tssr151682	transcription start site region 151682	1144 bp upstream
Tssr151683	transcription start site region 151683	1168 bp upstream
Tssr151684	transcription start site region 151684	1235 bp upstream
Tssr151685	transcription start site region 151685	1277 bp upstream
Tssr153709	transcription start site region 153709	1045 bp downstream
Zfp532	zinc finger protein 532	within coordinates