rs241438074 SNP Detail

Summary

• ID
  rs241438074
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:8981594 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCCAGAAA TGGAGGTGAA
  TCTCCCAAAG TCTGACATTG ATGTCTCAGG ACCCAATGTG GATGTCAAAG TTCCAGATGT
  GAACATTGAA GGACCTGAAG GAAAGCTGAA GGGTCCTAAG CTGAAGATGC CTGAGATGAA
  CATCAAGGCC CCAAAGATAT CCATGCCTGA TGTGGATTTG CATATGAAAG GCCCCAAAGT
  W
  AAAGGAGAAT ATGATGTCAC AATGCCAAAG CTGGAAGGAG ACTTGAAAGG CCCCAAAGTA
  GATGTCAGTG TTCCAGATGT TGATGTTCAT GGTCCCGACT GGAACTTGAA AATGCCAAAG
  ATTAAAATGC CCAAATTCAG CATGCCTAGT CTCAAAGGTG AAGGCCCAGA GTTGGATGTG
  AACATGCCCA AGGCTGATGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401711777	MGP_WTSI_19_9078720	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241438074					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401711777	MGP_WTSI_19_9078720	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:8981594 () rs orientation: forward

Symbol	Name	Function Class
Ahnak	AHNAK nucleoprotein	within coordinates
Tssr154925	transcription start site region 154925	1813 bp downstream
Tssr154926	transcription start site region 154926	1721 bp downstream
Tssr154927	transcription start site region 154927	1573 bp downstream
Tssr154928	transcription start site region 154928	1498 bp downstream
Tssr154929	transcription start site region 154929	1439 bp downstream
Tssr154930	transcription start site region 154930	1393 bp downstream
Tssr154931	transcription start site region 154931	1129 bp downstream
Tssr154932	transcription start site region 154932	1094 bp downstream
Tssr154933	transcription start site region 154933	464 bp downstream
Tssr154934	transcription start site region 154934	401 bp downstream
Tssr154935	transcription start site region 154935	346 bp downstream
Tssr154936	transcription start site region 154936	178 bp downstream
Tssr154937	transcription start site region 154937	80 bp downstream
Tssr154938	transcription start site region 154938	189 bp upstream
Tssr154939	transcription start site region 154939	1474 bp upstream
Tssr154940	transcription start site region 154940	1672 bp upstream
Tssr154941	transcription start site region 154941	1706 bp upstream
Tssr158086	transcription start site region 158086	1263 bp upstream
Tssr158087	transcription start site region 158087	691 bp upstream