rs241443223 SNP Detail

Summary

• ID
  rs241443223
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:16110503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCCGGGCG CGCTGAGCCG
  TCGGCGGTCG CTCGCTGCGG GGCCGCCTCG GTGGATGAGC TCGGGCCGCT GGGCGCACAG
  CCTTGGGCAG CGTCGGCGGC GGCGCCTGGA GGGCCGCGCG CTCTCCGAGA AGGCGGCGTG
  TGAGCGCGGC GGGGCGCGGC GGCCTTTCCT CGCGCGTCCC AGGCTCCCGG CCCCGCTCGT
  Y
  CCCGGCCCGC CTGGGCTGCG GGCCCGGCCG CCTCCTTTAC CGCGGCTCCC CTGAGCTCGT
  CCCTGACGCG CGCCCGGGCG GCGGGGCTCC GCGGCCGCCG CTGCCTCGGG GGAGCGAGGG
  CGGAGGGCGT GTGTGCGCGC GTGTGAGCAG GGCGCCGGCG GGGCTGCAGC GAGGCACTTC
  GGAAGAATGA CTCTGGAGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401853777	MGP_WTSI_19_16207629	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241443223					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401853777	MGP_WTSI_19_16207629	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:16110503 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10651	CpG island 10651	within coordinates
Gnaq	guanine nucleotide binding protein, alpha q polypeptide	mRNA-UTR
Rr544688	regulatory region 544688	1881 bp distal
Rr544689	regulatory region 544689	298 bp distal
Rr544690	regulatory region 544690	518 bp distal
Rr544691	regulatory region 544691	439 bp distal
Rr544692	regulatory region 544692	within coordinates
Rr544693	regulatory region 544693	1981 bp proximal
Tssr155379	transcription start site region 155379	418 bp downstream
Tssr155380	transcription start site region 155380	366 bp downstream
Tssr155381	transcription start site region 155381	344 bp downstream
Tssr155382	transcription start site region 155382	229 bp downstream
Tssr155383	transcription start site region 155383	within coordinates
Tssr155384	transcription start site region 155384	162 bp upstream