rs241449414 SNP Detail

Summary

• ID
  rs241449414
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:76300465 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTCTGAAT CCAGCCATCT
  CAAGGACAAC TTCTCCATCT TGTTGGCAGG GTCAAACAAC CTAGGAGCGA ACACCTACCC
  CACTTCTCCA AATGTTTTCT TAACTGTCTG TTAACAGGTA AAGAATATAG AAATTGCTGT
  TTTTCTAAAC CAAGGTACAT ATGTTATAAA AATATATAAC CAATCACCTG TCCTGCTCTA
  R
  TTAACTACAT GCAGCTGATC AGCTCCTTTG TCCCCTTATC ACTCTGAGCT CCAGACCTAA
  AGTTCAGGAG AATGAATTAA GGACCTTGAA GTCAGGTCCC TTGGATTCAC CCAGTCTCCA
  GCGGGTACTC CCTTGCTTAA GCCAAAATGT CAACCAAAAT ACAATTGGAT AACACTGCAG
  CTCACCCCAG CTCACCCCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324104733	CHEV_12_77354678	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241449414					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:76300465 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4777	CpG island 4777	1196 bp proximal
Gm47525	predicted gene, 47525	484 bp downstream
Mthfd1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	1607 bp upstream
Rr403350	regulatory region 403350	1354 bp upstream
Rr468112	regulatory region 468112	1117 bp proximal
Tssr113934	transcription start site region 113934	1518 bp upstream
Tssr113935	transcription start site region 113935	1553 bp upstream
Tssr113936	transcription start site region 113936	1599 bp upstream
Tssr113937	transcription start site region 113937	1641 bp upstream
Tssr113938	transcription start site region 113938	1657 bp upstream
Tssr113939	transcription start site region 113939	1680 bp upstream
Tssr113940	transcription start site region 113940	1762 bp upstream
Tssr113941	transcription start site region 113941	1792 bp upstream
Tssr116711	transcription start site region 116711	1355 bp downstream
Tssr116712	transcription start site region 116712	1381 bp downstream