rs241453835 SNP Detail

Summary

• ID
  rs241453835
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122521243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATATTGTCAC CCCCTGCCCC CGAAGCCCCC TATCCCATTC
  CCCCTCCTCC TGCATCTATG AGGCTGTTCC CCAACCCACC CACTTCTGCC TACTCGCCCT
  R
  GCCTACAGGA CCAAGGGCCT CCTCTTCTTC CGTTGATGTC CGACAAGGCC ATCCTCTGCT
  ACATATGAGG CTGGAGCCAT GGGTCCCTTC ATATGTACT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320914158	CHEV_3_122430512	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241453835					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122521243 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13771	CpG island 13771	1198 bp proximal
Pde5a	phosphodiesterase 5A, cGMP-specific	1579 bp upstream
Rr584392	regulatory region 584392	874 bp proximal
Rr584393	regulatory region 584393	1328 bp proximal
Rr584394	regulatory region 584394	1486 bp proximal
Rr584395	regulatory region 584395	1987 bp proximal
Tssr31509	transcription start site region 31509	1350 bp upstream
Tssr31510	transcription start site region 31510	1410 bp upstream
Tssr31511	transcription start site region 31511	1525 bp upstream
Tssr31512	transcription start site region 31512	1569 bp upstream
Tssr31513	transcription start site region 31513	1604 bp upstream