rs241463574 SNP Detail

Summary

• ID
  rs241463574
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7631931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTCCCACC CTCAGCCTGA
  ATTCTTTGCT TCCGGAATCC GGGATTGTTG CTGATATCGA GTTAGAAAAC ATCCTCGATC
  CTGACAGCTT CTACGAGCTC AAAAGCCAAC CCCTATCCCT CCGCTCCAGG TACGACTGTC
  TGAACTGATC CTGCTCCCAG TCTTTCTCCT TACTCCATGG CCAGGGACCC TCGGAGCCCA
  M
  CCAAACCCAT TCTCCCCTCC TCCGTAGCCT ATATTTTCCC CGTGCTGAAA TTATAGGCAT
  GGAGGAGGCC AGCAGGTGGA CATGTCAGTG CGTCTCTGGC CATGCCTTAC CCTTACTAGA
  ATTCACGTAC AGATCTCGCA AACCTGACTA CTTGGATAGG CGTGGCCTTC CTAAACGCCC
  GCCCTCCTGT GGGTAGGGCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403006298	MGP_WTSI_X_7342818	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241463574					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403006298	MGP_WTSI_X_7342818	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7631931 () rs orientation: forward

Symbol	Name	Function Class
Rr394688	regulatory region 394688	within coordinates
Rr689656	regulatory region 689656	1595 bp distal
Rr689657	regulatory region 689657	1284 bp distal
Tfe3	transcription factor E3	within coordinates
Tssr160430	transcription start site region 160430	1727 bp downstream
Tssr160431	transcription start site region 160431	1429 bp downstream
Tssr160432	transcription start site region 160432	1405 bp downstream
Tssr160433	transcription start site region 160433	1371 bp downstream
Tssr160434	transcription start site region 160434	1341 bp downstream
Tssr160435	transcription start site region 160435	1277 bp downstream
Tssr160436	transcription start site region 160436	1832 bp upstream
Tssr162815	transcription start site region 162815	1904 bp upstream
Tssr162816	transcription start site region 162816	105 bp downstream