rs241478023 SNP Detail

Summary

• ID
  rs241478023
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108691831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTACGTGA TCTGCACCTT TAAACTTACT CCATTCCAAA
  GCGGACCCTC GAGGCACCGC CCACATCCGT CTAACATCAC TTCCTTCAGT GTTTGGCTAG
  A
  AAAAAAAAAA AAAAAAAAAA ATCTGGGAAT CCGAGGGGTT GGGCTGAACG GCGATAAGGG
  GGCAGAGCGG AGCTTCTGCT GGAAATCCTG TTCCCTCAA                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321252872	CHEV_4_108507239	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241478023					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108691831 () rs orientation: forward

Symbol	Name	Function Class
Btf3l4	basic transcription factor 3-like 4	1020 bp upstream
Cpgi14564	CpG island 14564	495 bp distal
Cpgi14565	CpG island 14565	28 bp proximal
Rr376990	regulatory region 376990	within coordinates
Rr597224	regulatory region 597224	1091 bp distal
Rr597225	regulatory region 597225	530 bp distal
Rr597226	regulatory region 597226	23 bp distal
Tssr38313	transcription start site region 38313	17 bp downstream
Tssr38314	transcription start site region 38314	13 bp upstream
Tssr38315	transcription start site region 38315	75 bp upstream
Tssr38316	transcription start site region 38316	168 bp upstream
Tssr42738	transcription start site region 42738	1037 bp upstream
Tssr42739	transcription start site region 42739	1008 bp upstream
Tssr42740	transcription start site region 42740	380 bp upstream
Txndc12	thioredoxin domain containing 12 (endoplasmic reticulum)	44 bp upstream