rs241478620 SNP Detail

Summary

• ID
  rs241478620
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84571483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCGCCGCCG GGCGAAGTGC
  TGGGAGACCC AGCCGCCTGT CGCGCTCCTG CAGGGGGACC CTCAGCTAGG CAGCCAGCTG
  GCGCCCGCGT AGATGGCGAG GAGCCCCCAA GGCCTCCTGA TGCTGCTGCT GCTACACTAC
  TTGATCGTCG CCCTGGACTG TAAGTCTCTG GGGTAACAGT CCTTTCCACC CTCCGGTCTG
  K
  CTATACCAGC CTCCGGGACC CTCGCCTGCA GGCATGGCGC TCAGTGCTAG GGGGTCTGTC
  TCGGGGCGCC AGGCTTTGCA GTCTGGGAGC ACGGAGGGTA ATCTGGATGA GGGCAGGCTC
  TGGGCAGGGA GACTGAAGTC CTGTGCGTCT TGTAAATAGT GTTGGATCTG GGCAGTTAAG
  AATTGAAGAA AACAGACGAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397140847	MGP_WTSI_16_84774840	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241478620					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397140847	MGP_WTSI_16_84774840	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84571483 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8384	CpG island 8384	within coordinates
Jam2	junction adhesion molecule 2	within coordinates
Tssr139177	transcription start site region 139177	1587 bp downstream
Tssr139178	transcription start site region 139178	940 bp downstream
Tssr139179	transcription start site region 139179	720 bp downstream
Tssr139180	transcription start site region 139180	691 bp downstream
Tssr139181	transcription start site region 139181	502 bp downstream
Tssr139182	transcription start site region 139182	450 bp downstream
Tssr139183	transcription start site region 139183	421 bp downstream
Tssr139184	transcription start site region 139184	398 bp downstream
Tssr139185	transcription start site region 139185	357 bp downstream
Tssr139186	transcription start site region 139186	301 bp downstream
Tssr139187	transcription start site region 139187	281 bp downstream
Tssr139188	transcription start site region 139188	263 bp downstream
Tssr139189	transcription start site region 139189	172 bp downstream
Tssr139190	transcription start site region 139190	156 bp downstream
Tssr141866	transcription start site region 141866	1981 bp upstream