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rs241481118 SNP Detail
Summary
  • ID
    rs241481118
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr8:85429540 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GAAAACTGAG ATGGTATGTG
    CCTCCAGCCC AGCACCTGCC CCTCCCTCTA AGCCGGCCTC ACCTGGGCCC CTTTCTACAG
    AGGAGGTGGA CCACCGAAAC ACGTGCACTC CCTGGTTGCC TCCCGGCGTG CCAGTGATAA
    ACCTGGGACA CACCAGGCCC ATAGGGGCAG CCATGCCCAC CACAGAGCTC AGTGCCTTTC
    R
    GCCCTCCTTG CTGCAGCTAA CTGCCTTGGG AAGAGCTCCA CCTACCCTGG CTGTACATTA
    CCACCCTCAC CCCTTCCTCA ACAGGTCAGT GGGCAGCTCG GACTATGGGC AGTGCTTAGG
    TTTGGGGGCC AGGGTCTTTG CCTACAAAGT GTTCATGACC CACAACCCCT TACAGTGTCT
    ACATTGGGCC AGCAGGACCC                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss375404538 MGP_WTSI_8_87226810 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs241481118 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss375404538 MGP_WTSI_8_87226810 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr8:85429540 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi20707 CpG island 20707 902 bp distal
Cpgi20708 CpG island 20708 756 bp proximal
Lyl1 lymphoblastomic leukemia 1 within coordinates
Nfix nuclear factor I/X 1801 bp downstream
Rr178191 regulatory region 178191 1940 bp distal
Rr187001 regulatory region 187001 within coordinates
Rr368567 regulatory region 368567 1606 bp upstream
Rr401025 regulatory region 401025 1426 bp downstream
Tssr78433 transcription start site region 78433 1414 bp downstream
Tssr78434 transcription start site region 78434 1142 bp downstream
Tssr78435 transcription start site region 78435 1113 bp downstream
Tssr78436 transcription start site region 78436 1084 bp downstream
Tssr78437 transcription start site region 78437 1029 bp downstream
Tssr78438 transcription start site region 78438 1001 bp downstream
Tssr78439 transcription start site region 78439 480 bp upstream
Tssr82116 transcription start site region 82116 1185 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory